Course overview

Pre-class reading

Please read these before Thursday of Week 1 - we will discuss these in class.

Baker, in Nature: “Is there a reproducibility crisis?”

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Powers and Hampton, in Ecological Applications: “Open science, reproducibility, and transparency in ecology”

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Opensciency overview on the “Ethos of Open Science”

Direct link: https://opensciency.github.io/sprint-content/ethos-of-open/lesson1-intro-to-open-science.html

Rose O’Dea seminar on Open Science in Ecology and Evolution

Direct link: https://www.youtube.com/watch?v=Op9l8PwCTfY&t=1793s

In-class lecture

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Further learning

Optional reading to further explore the history and nuances of reproducible research

Peng and Hicks, in Annual Review of Public Health: “Reproducible Research: A Retrospective”

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Markowetz, in Genome Biology: “Five selfish reasons to work reproducibly”

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Leek and Peng, in PNAS: “Reproducible research can still be wrong”

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Peng, in Significance magazine: “The reproducibility crisis in science: A statistical counterattack”

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Jenkins et al., in Ecology and Evolution: “Reproducibility in ecology and evolution: Minimum standards for data and code”

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