Digital lab notebooks

Reproducible research in ecology and evolution

About the course
Course overview
Tools for this course
File paths and project management
Writing with quarto
Version control with Git
Data visualization: principles and practice
How R stores data
Data archiving
Crash courses
Accessing online data through R
Digital lab notebooks
Tidyverse deep dive
HPC overview
Tidyverse challenge
Activities
Semester project
Resources for continued learning
Appendix
- Notes on website/book setup
References
Acknowledgement Statements

Table of contents

In-class slides
Exercises

Digital lab notebooks

In-class slides

View slides in full screen

Exercises

Follow the instructions on the lab notebook template to establish your own lab notebook.

Accessing online data through R

Tidyverse deep dive