Week 1: Course overview and setup
In-class materials
Independent reading/activities
Additional readings to complement in-class discussions.
Further learning
Optional reading to further explore the history and nuances of reproducible research
Roger D. Peng, Stephanie C. Hicks. 2021. Reproducible Research: A Retrospective. Annual Review of Public Health 42:79-93. https://doi.org/10.1146/annurev-publhealth-012420-105110
Markowetz, F. Five selfish reasons to work reproducibly. Genome Biol 16, 274 (2015). https://doi.org/10.1186/s13059-015-0850-7
Leek, Jeffrey T., and Roger D. Peng. “Reproducible research can still be wrong: adopting a prevention approach.” PNAS 112.6 (2015): 1645-1646. https://doi.org/10.1073/pnas.1421412111.
Jenkins, G. B., et al. (2023). Reproducibility in ecology and evolution: Minimum standards for data and code. Ecology and Evolution, 13, e9961. https://doi.org/10.1002/ece3.9961
Baker, M. 1,500 scientists lift the lid on reproducibility. Nature 533, 452–454 (2016). https://doi.org/10.1038/533452a
S. M. Powers, and S. E. Hampton. 2019. Open science, reproducibility, and transparency in ecology. Ecological Applications 29(1):e01822. https://doi.org/10.1002/eap.1822